GEO .h5 data access
In addition to the assembled data provided in the scRNA-seq Downloads page, we have deposited the demultiplexed, per-sample Cell Ranger output .h5 files in the Gene Expression Omnibus (GEO) for public access.
These .h5 files can be found on GEO at accession ID GSE274680.
These files can be read into analysis packages using functions designed for reading 10x Genomics Cell Ranger .h5 files.
Raw data in dbGaP
Raw ALTRA scRNA-seq data was generated using a 3' reverse transcription method, and therefore includes subject-derived single nucleotide polymorphisms. To comply with personally identifiable information protection standards, raw data in FASTQ format is available in dbGaP for controlled access at accession phs003944.v1.p1.