Collaboration
Work on studies, share data and visualizations, and publish your findings as a publication or Data App.
Research
Find and access your research, store intermediate files, manage IDE state, and save results or visualizations.
What's New?
2025-05-21
More Updated Metadata Documentation Published
An updated version of Attach Metadata to Make Files Searchable (Tutorial) is now available
2025-05-14
Cellranger Version 9.0.1 Launched
The Cell Ranger version 9.0.1 pipeline is now available for flex RNA runs in HISE. For full details, review the official 10x Genomics release notes. The previous version of Cell Ranger remains available. To continue using the previous version, keep your submission sheet as is. To update to the new version, specify frna-v3 in the Type column of the Header tab on your Submission Sheet.
Questions? See Use Cell Ranger, or click the Support button on any page of the HISE user documentation.
2025-04-28
Updated Metadata Documentation Published
An updated version of Create, Edit, or Delete Metadata is now available
2025-04-16
Xenium Pipeline Launched
The Xenium pipeline enables spatial transcriptomics analysis within HISE, converting raw Xenium data into formats that can be analyzed, explored, and visualized. For details, see Use the Xenium Pipeline (Tutorial).
2025-04-03
New Conda Documentation Published
- New document shows you how to create and share a customized Conda environment: Use the Conda Environment (Tutorial)