Last modified 2026-01-30 |
Work with File Sets (Tutorial)
 | Abbreviations Key |
| HISE | Human Immune System Explorer |
| IDE | integrated development environment |
| QC | quality control |
| scRNA-seq | single-cell RNA sequencing |
At a Glance
When your analysis generates results of particular interest, you can save and organize them as file sets. You can save a group of pipeline output files, for example, such as QC reports or labeled scRNA-seq files. Then you can read the files into an IDE or upload the file sets to a study for efficient data sharing and analysis. If you have questions, contact Support.
Instructions
Create a file set
To create a file set from the results of an advanced search, follow the instructions below.
1. Navigate to HISE, and use your organizational email address to sign in.
2. In the top navigation menu, click RESEARCH, and choose Advanced Search from the drop-down list.
3. Create a query or use a saved query. For details, see Use Advanced Search for Basic Queries (Tutorial).
A. From the floating menu, choose ADD TO FILE SET.
B. In the Add to Existing File Set dialog box, choose the study to which you want to save the file set.
C. (Optional) In the Add to Existing File Set dialog box, add a public-facing name for your file set, and click NEXT.
D. n the Add to Existing File Set dialog box, review the details, and click ADD TO FILE SET.
You should receive a confirmation message similar to this one.
Download a file set
You can share a file set for others to analyze or use as a starting point for their own research. To download a file set, follow the steps below.
1. Navigate to HISE, and use your organizational email address to sign in.
2. In the top navigation menu, click COLLABORATION SPACE.
3. From the Your Studies section, choose the study that contains the file you want to download (in this case, scRNA scATAC Taiji v2).
4. From the left navigation menu, click FILE SETS.
5. Find the file set that contains the file you want to download, and click IDE SCRIPT.
6. In the Load files in IDE dialog box, click COPY SCRIPT.
7. To open an IDE, navigate to RESEARCH > IDEs, and paste in the script you just copied. For details, see Create Your First HISE IDE (Tutorial).
Related Resources
Create Your First HISE IDE (Tutorial)